%%
%%  MSUstyle.cls was created and edited by Seth Humphries in Jun-2007 and
%%      last update 30-Mar-2011
%%
%%   Copyright (c) 2007-2011 Seth D. Humphries
%%    This work is licensed under the Creative Commons
%%    Attribution-Noncommercial-Share Alike 3.0 License. To view a copy
%%    of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/;
%%    or, (b) send a letter to Creative Commons, 171 2nd Street, Suite
%%    300, San Francisco, California, 94105, USA.
%%
%%   The above copyright notice and this permission notice shall be included 
%%	in all copies or substantial portions of the Software.
%%
%%   THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS 
%%	OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF 
%%	MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. 
%%	IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY 
%%	CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, 
%%	TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE 
%%	SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
%%
%%     To see changes to this file see changes.txt
%%
%% This MSUstyle.cls class is a direct derivative of the msuthesis.cls created by 
%% Dr Steve Shaw at Montana State University (2005) for use in creating theses
%% with the correct styles demanded by the Division of Graduate Education (DGE). 
%% For msuthesis, Dr. Shaw used a GNU public licensed (GPL'd) thesis class from 
%% Georgia Tech called gatech-thesis.cls. Because of such this is also offered 
%% free and under the GPL. I have merged the two class files, greatly simplified 
%% them and reduced redundant commands. 
%%
%% I also added input options so that this one class
%% can be used for either a msu styled thesis or a msu styled dissertation.
%% The differences between msu theses and msu dissertations is the permissions 
%% page, the use of `Doctor of Philosophy' vs 'Master of Science' and the 
%% word 'thesis' versus 'dissertation'. 
%%
%% See the example of usage below for more detail on that issue.
%%
%%
%% NOTHING!!! in this file should be changed or modified unless the DGE changes 
%% the required style or format of a submitted thesis or dissertation
%%
%% 
%% KEEP reading ->
%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%
%%  Example of use in a file called MYmsuETD.tex or whatever you desire to call it.
%%     one could simply copy this example, then uncomment it and use it.
%%
%%    \documentclass[12pt,oneside,doublespaced,normalmargins,dissertation,final]{MSUstyle}
%%%or \documentclass[11pt,twoside,oneandahalfspaced,normalmargins,thesis,draft]{MSUstyle}
%%%or variations there on  ... see Option Declaration Section below for more options
%%
%%
%%%%%%%%%%%%%%%%%%%%  Definitions %%%%%%%%%%  
%%    define stuff for dissertation or thesis
%%    change definition of name to your name and keys to key words you want searched 
%%    by the likes of google and such ilk. This information shows up in the pdf file properties
%% \newcommand{\name}{Yo fullname Candidate} %PUT your full name here
%% \newcommand{\DocTitle}{Carbon Dioxide Sequestration Monitoring and Verification Via Laser Based 
%%   Detection System}
%% \degreetitle{Engineering}
%% \department{Electrical and Computer Engineering}
%% \committeechair{Dr. So A Ndso}
%% \departmentchair{Dr. Big E. Head}
%% \graduatedean{Dr. Bigg E. Ego}
%% \submitdate{August, 2008}
%% \copyrightyear{2008} %add one to year if document submitted in Dec.
%% 
%% \newcommand{\keys}{Electrical Engineering, PhD, Dissertation, Tunable, Lasers, Laser Diode, DFB, Optics,
%%    Lidar, Carbon Dioxide, CO2, Carbon, Sequestration, CCS, Carbon Storage, Monitor, Verify, Global Warming, 
%%    Montana, Montana State} %put searchable words that you want searched here
%%  
%% \bibfiles{gwarm,laser,sequestration,monitor} %your .bib files, files containing bibliographic 
%% %% information/references that you are going to cite in your ETD.
%% %%
%% 
%% 
%% %%%%%%%%%%%%%%%%%%%%  Packages and preparations %%%%%%%%%%  
%% \usepackage{graphicx} %for the \includegraphics command and figures
%% \usepackage{color} %for changing text color in chapters
%% \usepackage{subfigure} %to be able to have multiple plots in one figure
%% \usepackage{listings} %used for formatting code...see appendices
%% \usepackage{varioref}
%% \lstset{%set listings styles
%% 	language=Matlab, % program language for keywords and comments styles
%% 	basicstyle=\tiny, %font size and style
%% 	identifierstyle=\color{red}, %variable name style
%% 	stringstyle=\ttfamily, %string style
%% 	keywordstyle=\color{blue}\bfseries, %language keyword style
%% 	commentstyle=\color{green}\itshape, %commentstyle
%% 	breaklines=true,  % sets automatic line breaking
%% 	breakatwhitespace=false,   %break line not just at whitespaces
%% } 
%% \usepackage[pdftex,
%%     colorlinks=true,linkcolor=black,citecolor=black,filecolor=black,urlcolor=black,pdftitle={\DocTitle},
%%     pdfauthor={\name},pdfsubject={\degreetype \ for \name},pdfkeywords={\keys},pdfcreator={PDFLaTex 
%%     via \name},bookmarks=true,plainpages=false, pdffitwindow=true]{hyperref} %the \  is to give a space
%%
%%
%% %%%%%%%%%%%%%%%%%%%%  actual Document %%%%%%%%%%  
%%    \begin{document}
%%       \bibliographystyle{IEEEtran.bst} %or use another bibliography style class.
%%     %% \algorithmspagetrue %uncomment this line if you desire a ``list of algorithms'' page.
%%       \begin{preliminary}
%%           \begin{dedication} %dedication is optional
%%              I dedicate this sappy work to my ma... %or dedication file name as input
%%           \end{dedication}
%%           \begin{acknowledgements}
%%              I would like to thank... %or appendix file name as input
%%           \end{acknowledgements}
%%           \begin{vita} %vita is optional
%%              I feel I am under valued so I talk about myself here... %or vita file input
%%           \end{vita}
%%
%%           \begin{singlespaced}
%%               \contents
%%           \end{singlespaced}
%%
%%           \begin{abstract}
%%              \input{abstract} %abstract file name
%%           \end{abstract}
%%       \end{preliminary}
%%
%%       \chapter{Introduction} %chapter file name happens to be Introduction.tex
%%       \chapter{ChTwo} %chapter file name is ChTwo.tex. call it whatever you want.
%%	 \chapter{YetAnotherChapter_YAC} %another chapter file 
%%             ...
%%       \chapter{Conclusion}
%%
%%       \begin{postliminary}
%%          \Appendtrue %comment this out if you have no appendix
%%          \references
%%       \end{postliminary}
%%
%%       \appendix
%%       \input{A_Long_Proof} %appendix file name
%%       \input{AVery_Long_Proof} %second appendix, appendix file name
%%             ...
%%    \end{document}
%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%






%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% code section %%%%%
% do not change anything below unless you know what you are doing.


%%%%%%%%%%%%        IDENTIFICATION        %%%%%%%%%%%%
\newcommand{\MSUstyleversion}{1.2}% current version number
\newcommand{\MSUstyleupdated}{2009/10/20}% date of last change(s)

\NeedsTeXFormat{LaTeX2e}
\ProvidesClass{MSUstyle}
        [\MSUstyleupdated\space\MSUstyleversion\space(Seth Humphries)]%
\RequirePackage{calc}% part of LaTeX tools bundle   
\RequirePackage[plain]{algorithm}
\RequirePackage{algorithmic}


%%%%%%%%%%%%         INITIAL CODE         %%%%%%%%%%%%
\widowpenalty=19999 % No widows at bottom of page 
\clubpenalty=19999 % No orphans at top of page 
\brokenpenalty=999 %no hyphenations at page breaks
\hyphenpenalty=100 %no hyphenation at end of lines
\tolerance=1000 %adjust to make the above penalties tighter or looser 
\raggedbottom



%% Switch for testing draft mode (toggled by ``draft'' option).
\newif\if@draft
\@draftfalse % initially false by default

%% Switch for testing current page style.
\newif\if@tcpage
 % no default value (set by \pagestyle)
 % indicates that page numbers are in the upper corners

%% Macro for testing the size of margins.
\newcommand{\@marginsize}{}

%% Because of the draft option, and to allow users to override
%% defaults, we don't want to be passing conflicting options back to
%% the report class, so we define our own temporary toggles holding
%% the most recent setting for each of four basic options: point size,
%% number of page sides, whether new chapters open on right-hand pages
%% or on any page, and line spacing.  These toggles will be set from
%% the corresponding options below.
%
\newcommand{\@thesisptsz}{}
\newcommand{\@thesisside}{}
\newcommand{\@thesisopen}{}
\newcommand{\@thesislnsp}{}

%% the next couple commands are used to switch between 
%% differences in theses and dissertations
\newcommand{\perm}{}
\newcommand{\degree}{}
\newcommand{\degreetype}{}




%%%%%%%%%%%%      OPTION DECLARATION      %%%%%%%%%%%%

%% ``draft'' option: change default document settings.
\DeclareOption{draft}{\@drafttrue
   \typeout{MyThesis Class Option: ``draft''}
   \ExecuteOptions{11pt,oneside,openany,doublespaced,normalmargins}
   \PassOptionsToClass{draft}{report}
   %% Macros for printing "DRAFT" at the corners of a page.
   \newcommand{\tlDRAFT}%
{\raisebox{ 3ex}[0pt][0pt]{\sffamily\scriptsize \llap{DRAFT\ V}ersion \@draftver}}
   \newcommand{\trDRAFT}%
{\raisebox{ 3ex}[0pt][0pt]{\sffamily\scriptsize DRAFT\ V\rlap{ersion \@draftver}}}
   \newcommand{\blDRAFT}%
{\raisebox{-3ex}[0pt][0pt]{\sffamily\scriptsize \llap{DRAFT\ V}ersion \@draftver}}
   \newcommand{\brDRAFT}%
{\raisebox{-3ex}[0pt][0pt]{\sffamily\scriptsize DRAFT\ V\rlap{ersion \@draftver}}}
}%DeclareOption{draft}


%% Margin options: change the size of margins.
%% choose normalmargins option
\DeclareOption{narrowmargins}{\renewcommand{\@marginsize}{0}}
\DeclareOption{normalmargins}{\renewcommand{\@marginsize}{1}}
\DeclareOption{widemargins}{\renewcommand{\@marginsize}{2}}
\DeclareOption{extrawidemargins}{\renewcommand{\@marginsize}{3}}
\DeclareOption{oldmargins}{\renewcommand{\@marginsize}{4}}

%% Point Size options: change current setting.
\DeclareOption{10pt}{\renewcommand{\@thesisptsz}{10pt}}
\DeclareOption{11pt}{\renewcommand{\@thesisptsz}{11pt}}
\DeclareOption{12pt}{\renewcommand{\@thesisptsz}{12pt}}
\DeclareOption{13pt}{\renewcommand{\@thesisptsz}{13pt}}

%% Number of Page Sides options: change current setting.
\DeclareOption{twoside}{\renewcommand{\@thesisside}{twoside}}
\DeclareOption{oneside}{\renewcommand{\@thesisside}{oneside}}

%% New Chapter Openings options: change current setting.
\DeclareOption{openany}{\renewcommand{\@thesisopen}{openany}}
\DeclareOption{openright}{\renewcommand{\@thesisopen}{openright}}

%% Line Spacing options: change current setting.
\DeclareOption{singlespaced}{\renewcommand{\@thesislnsp}{1}}
\DeclareOption{oneandahalfspaced}{\renewcommand{\@thesislnsp}{1.25}}
\DeclareOption{doublespaced}{\renewcommand{\@thesislnsp}{1.66}}

\DeclareOption{thesis}{\renewcommand{\perm}{\@thesisPermission}%
  \renewcommand{\degree}{\@thesisD}%
  \renewcommand{\degreetype}{\@thesisDT}%
 }
\DeclareOption{dissertation}{\renewcommand{\perm}{\@dissertationPermission}%
  \renewcommand{\degree}{\@dissertationD}%
  \renewcommand{\degreetype}{\@dissertationDT}%
 }

% reseting of numbering between chapters. 
\DeclareOption{nonumreset}{
	\newif\ifnumreset
		\numresetfalse
}
\DeclareOption{numreset}{
	\newif\ifnumreset
		\numresettrue
}


%% All other options are passed to the base class directly.
\DeclareOption*{\PassOptionsToClass{\CurrentOption}{report}}


%%%%%%%%%%%%       OPTION EXECUTION       %%%%%%%%%%%%
%% Default settings.
\ExecuteOptions{12pt,letterpaper,oneside,%
openright,doublespaced,normalmargins,dissertation,final,numreset}
%
\ProcessOptions


%%%%%%%%%%%%       PACKAGE  LOADING       %%%%%%%%%%%%
%% Load base class using current setting for basic options.
\LoadClass[\@thesisptsz,\@thesisside,\@thesisopen]{report}






%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%          MAIN  CODE          %%%%%%%%%%%%


%%% phantomsection, texorpdfstring, and pdfbookmark are needed if you do
%%%    not compile via pdflatex. !!!!!!!!!
%   \newcommand{\phantomsection}{}% helps with hyperref.  \phantomsection
%                                 is provided by pdflatex, but not latex.
%   \newcommand{\texorpdfstring}[2]{#1}%
%   \def\pdfbookmark[#1]#2#3{}%
%%%%%%

 \newcommand{\ignore}{} %used to comment out parts of latex
 \newcommand{\comment}{} %used to comment out parts of latex




%%%%%%    Line Spacing
%
%% \linespacing is used to define the default line spacing. 
%% for the entire document. If the argument is less than 
%% 1.25 (for 1.5-spaced) a warning message is displayed
%% when not in draft mode.
%%
%% Don't use this command for temporary, localized changes.
%% Instead, use the ``spacing environments'':
%%    \begin{singlespaced}      ...\end{singlespaced}
%%    \begin{oneandahalfspaced}...\end{oneandahalfspaced}
%%    \begin{doublespaed}      ...\end{doublespaced}
%%    \begin{longquote}        ...\end{longquote}
%%    \begin{longquotation}    ...\end{longquotation}
%%    \begin{newspacing}{x.xx} ...\end{newspacing}
\newcommand{\linespacing}[1]{%
  \gdef\@spacing{#1}
  \newlinestretch{#1}\if@draft\else\ifdim #1pt < 1.25pt\typeout
{MyThesis Class Warning: line spacing less than 1 1/2}\fi\fi
}

%
%% ``longquote'' and ``longquotation'' produce single-spaced quotes, while
%% ``newspacing'' encloses paragraphs with a different line spacing,
%% such as ``singlespaced'', ``oneandahalfspaced'', or ``doublespaced''.
\newenvironment{longquote}%
{\begin{quote}\newlinestretch{1}}{\end{quote}}
\newenvironment{longquotation}%
{\begin{quotation}\newlinestretch{1}}{\end{quotation}}
\newenvironment{singlespaced}%
{\begin{newspacing}{1}}{\end{newspacing}}
\newenvironment{oneandahalfspaced}%
{\begin{newspacing}{1.25}}{\end{newspacing}}
\newenvironment{doublespaced}%
{\begin{newspacing}{1.66}}{\end{newspacing}}
\newenvironment{newspacing}[1]%
{\par\begingroup\newlinestretch{#1}}%
{\par\vskip\parskip\vskip\baselineskip\endgroup
   \vskip-\parskip\vskip-\baselineskip}

%
%% To change the actual line spacing.
\newcommand{\newlinestretch}[1]%
{\renewcommand{\baselinestretch}{#1}\currenttextsize}

%
%% To keep track of the current text size.
\let\currenttextsize=\normalsize
%
%% Redefine size-changing commands to update \currenttextsize.
\let\tmp@tiny=\tiny
\renewcommand{\tiny}%
{\let\currenttextsize=\tmp@tiny\tmp@tiny}
\let\tmp@scriptsize=\scriptsize
\renewcommand{\scriptsize}%
{\let\currenttextsize=\tmp@scriptsize\tmp@scriptsize}
\let\tmp@footnotesize=\footnotesize
\renewcommand{\footnotesize}%
{\let\currenttextsize=\tmp@footnotesize\tmp@footnotesize}
\let\tmp@small=\small
\renewcommand{\small}%
{\let\currenttextsize=\tmp@small\tmp@small}
\let\tmp@normalsize=\normalsize
\renewcommand{\normalsize}%
{\let\currenttextsize=\tmp@normalsize\tmp@normalsize}
\let\tmp@large=\large
\renewcommand{\large}%
{\let\currenttextsize=\tmp@large\tmp@large}
\let\tmp@Large=\Large
\renewcommand{\Large}%
{\let\currenttextsize=\tmp@Large\tmp@Large}
\let\tmp@LARGE=\LARGE
\renewcommand{\LARGE}%
{\let\currenttextsize=\tmp@LARGE\tmp@LARGE}
\let\tmp@huge=\huge
\renewcommand{\huge}%
{\let\currenttextsize=\tmp@huge\tmp@huge}
\let\tmp@Huge=\Huge
\renewcommand{\Huge}%
{\let\currenttextsize=\tmp@Huge\tmp@Huge}
%



\providecommand{\e}[1]{\ensuremath{\times 10^{#1}}} % for doing things like...
% as output 5x10^3 from latex code: 5\e{3}
%


%%%%%%    Front Matter Parameters
%
%% The following commands set the respective field values so we
%% can generate the title page, copyright page, permissions page 
%% and signature page automatically
%
\renewcommand{\author}[1]%
{\ifx\empty#1\empty\else\gdef\@author{#1}\fi}

\renewcommand{\title}[1]%
{\ifx\empty#1\empty\else\gdef\@title{#1}\fi}

\newcommand{\departmentchair}[1]%
{\ifx\empty#1\empty\else\gdef\@departmentchair{#1}\fi}

\newcommand{\committeechair}[1]%
{\ifx\empty#1\empty\else\gdef\@committeechair{#1}\fi}

\newcommand{\graduatedean}[1]%
{\ifx\empty#1\empty\else\gdef\@graduatedean{#1}\fi}

\newcommand{\department}[1]%
{\ifx\empty#1\empty\else\gdef\@department{#1}\fi}

\newcommand{\degreetitle}[1]%
{\ifx\empty#1\empty\else\gdef\@degreetitle{#1}\fi}

\newcommand{\copyrightyear}[1]%
{\ifx\empty#1\empty\else\gdef\@copyrightyear{#1}\fi}

\newcommand{\submitdate}[1]%
{\ifx\empty#1\empty\else\gdef\@submitdate{#1}\fi}

\newcommand{\thesisPermission}[1]%
{\ifx\empty#1\empty\else\gdef\@thesisPermission{#1}\fi}

\newcommand{\dissertationPermission}[1]%
{\ifx\empty#1\empty\else\gdef\@dissertationPermission{#1}\fi}

\newcommand{\thesisD}[1]%
{\ifx\empty#1\empty\else\gdef\@thesisD{#1}\fi}

\newcommand{\dissertationD}[1]%
{\ifx\empty#1\empty\else\gdef\@dissertationD{#1}\fi}

\newcommand{\thesisDT}[1]%
{\ifx\empty#1\empty\else\gdef\@thesisDT{#1}\fi}

\newcommand{\dissertationDT}[1]%
{\ifx\empty#1\empty\else\gdef\@dissertationDT{#1}\fi}

\newcommand{\draftver}[1]%
{\ifx\empty#1\empty\else\gdef\@draftver{#1}\fi} %draft version 

\newcommand{\name}[1]%
{\ifx\empty#1\empty\else\gdef\name{#1}\fi} %name

\newcommand{\keys}[1]%
{\ifx\empty#1\empty\else\gdef\keys{#1}\fi} %name

\newcommand{\DocTitle}[1]%
{\ifx\empty#1\empty\else\gdef\DocTitle{#1}\fi} %name

\newcommand{\OWNwebpage}[1]%
{\ifx\empty#1\empty\else\gdef\OWNwebpage{#1}\fi} %name
%
%% bibliography databases
%
\newcommand{\bibfiles}[1]%
{\ifx\empty#1\empty\else\gdef\@bibfiles{#1}\fi}

%
%% default values of private functions
%
\def\@title{\DocTitle}
\def\@author{\name}
\def\@bibfiles{}
\def\@committeechair{}
\def\@departmentchair{}
\def\@department{}
\def\@degreetitle{}
\def\@graduatedean{}
\def\@submitdate{\ifcase\the\month\or
  January\or February\or March\or April\or May\or June\or
  July\or August\or September\or October\or November\or December\fi
  \space \number\the\year}
\def\@gradyear{2008}  
\def\@copyrightyear{\number\the\year}
\def\@bibfiles{}
\def\@draftver{}


\def\@thesisDT{thesis} %degree type
\def\@thesisD{Master of Science} %degree
\def\@dissertationDT{dissertation} %degree type
\def\@dissertationD{Doctor of Philosophy} %degree

\def\@dissertationPermission{In presenting this dissertation in partial fulfillment of the requirements for a doctoral degree at Montana State University, I agree that the Library shall make it available to borrowers under rules of the Library. I further agree that copying of this dissertation is allowable only for scholarly purposes, consistent with ``fair use'' as prescribed in the U.S. Copyright Law. Requests for extensive copying or reproduction of this dissertation should be referred to ProQuest Information and Learning, 300 North Zeeb Road, Ann Arbor, Michigan 48106, to whom I have granted ``the exclusive right to reproduce and distribute my dissertation in and from microform along with the non-exclusive right to reproduce and distribute my abstract in any format in whole or in part.''}

\def\@thesisPermission{In presenting this thesis in partial fulfullment of the requirements for a master's degree at Montana State University, I agree that the Library shall make it available to borrowers under rules of the Library. \newline \indent If I have indicated my intention to copyright this thesis by including a copyright notice page, copying is allowable only for scholarly purposes, consistent with ``fair use'' as prescribed in the U.S. Copyright Law.  Requests for permission for extended quotation from or reproduction of this thesis in whole or in parts may be granted only by the copyright holder.}

%% Switch for printing copyright notice on titlepage
%
\newif\ifcopyright
\copyrightfalse % initially false by default

%% Switch for generating a title page
%
\newif\iftitlepage
\titlepagetrue % initially true by default

%% Switch for generating a signature page
%
\newif\ifsignaturepage
\signaturepagetrue % initially true by default

%% Switch for generating a list of figures
%
\newif\iffigurespage
\figurespagetrue % initially true by default

%% Switch for generating a list of tables
%
\newif\iftablespage
\tablespagetrue % initially true by default

%% Switch for generating a list of algorithms
%
\newif\ifalgorithmspage
\algorithmspagefalse % initially false by default

%% Switch for generating a table of contents
%
\newif\ifcontentspage
\contentspagetrue % initially true by default


%% Switch for generating a bibliography
%
\newif\ifbibpage
\bibpagetrue % initially true by default

\newif\ifAppend %if there is no appendix the ref page has different look
\Appendfalse % initially false by default

%% Switch for relaxing the strict margin requirements 
%% on the title page and signature page.  Default is to
%% rigidly adhere to the standard (but that's ugly)
%
\newif\ifstrictmargins
\strictmarginstrue % initially true by default


%% \settocdepth - use this to change how "deep" to number 
%%   in the table of contents for different sections; e.g.
%%   subsubsections for chapters, then switch to chapter-only
%%   for appendices.
%% tocdepth is reset to the value in \setchaptertocdepth
%%   at each \chapter{}, or to the value in \setappendixtocdepth
%%   at each \chapter{} after the \appendix command.  So, if 
%%   you want to change the defaults, use \setchaptertocdepth and 
%%   \setappendixtocdepth.  To temporarily change depth for the 
%%   current section, use a different function: \settocdepth[x].  
%%   You should never need to call \setcounter{tocdepth}{..} 
%%   directly.
%%
%% 0 = chapter only
%% 1 = chapter + sections
%% 2 = chapter, section, subsection
%% 3 = chapter, section, subsection, subsubsection
%
\newcommand{\settocdepth}[1]{%
  \addtocontents{toc}{\protect\setcounter{tocdepth}{#1}}}
\newcommand{\setlotdepth}{%
  \addtocontents{lot}{\protect\setcounter{tocdepth}{1}}}
\newcommand{\setlofdepth}{%
  \addtocontents{lof}{\protect\setcounter{tocdepth}{1}}}

\newcommand{\setappendixtocdepth}[1]{%
  \def\appendix@tocdepth{#1}}

\newcommand{\setchaptertocdepth}[1]{%
  \def\chapter@tocdepth{#1}} 
\setchaptertocdepth{3} %call above function and set it
\setcounter{secnumdepth}{4}

\newcommand{\setfrontpagestyle}[1]{%
  \gdef\front@pagestyle{#1}}
\newcommand{\setbodypagestyle}[1]{%
  \gdef\body@pagestyle{#1}}
\newcommand{\setbackpagestyle}[1]{%
  \gdef\back@pagestyle{#1}}




% note that MT is the postal abreviation for Montana. go MSU!
% dummy commands to prevent recursion errors...
\newcommand{\MTcontentsname}{}
\newcommand{\toccontentlinestring}{}
\newcommand{\tocpdfbookmarkstring}{}
\newcommand{\MTlistfigurename}{}
\newcommand{\lofcontentlinestring}{}
\newcommand{\lofpdfbookmarkstring}{}
\newcommand{\MTlisttablename}{}
\newcommand{\lotcontentlinestring}{}
\newcommand{\lotpdfbookmarkstring}{}
\newcommand{\MTlistalgorithmname}{}
\newcommand{\loacontentlinestring}{}
\newcommand{\loapdfbookmarkstring}{}

\newcommand{\settocstring}[1]{%
  \renewcommand{\MTcontentsname}{#1}
  \renewcommand{\contentsname}{\MakeUppercase{#1}}
  \renewcommand{\toccontentlinestring}{%
    \texorpdfstring{\MakeUppercase{#1}}{#1}
}
  \renewcommand{\tocpdfbookmarkstring}{#1}
}
\newcommand{\setlofstring}[1]{%
  \renewcommand{\MTlistfigurename}{#1}
  \renewcommand{\listfigurename}{\MakeUppercase{#1}}
  \renewcommand{\lofcontentlinestring}{%
    \texorpdfstring{\MakeUppercase{#1}}{#1}
}
  \renewcommand{\lofpdfbookmarkstring}{#1}
}
\newcommand{\setlotstring}[1]{%
  \renewcommand{\MTlisttablename}{#1}
  \renewcommand{\listtablename}{\MakeUppercase{#1}}
  \renewcommand{\lotcontentlinestring}{%
    \texorpdfstring{\MakeUppercase{#1}}{#1}
}
  \renewcommand{\lotpdfbookmarkstring}{#1}
}

\newcommand{\setloastring}[1]{%
  \renewcommand{\MTlistalgorithmname}{#1}
  \renewcommand{\listalgorithmname}{\MakeUppercase{#1}}
  \renewcommand{\loacontentlinestring}{%
    \texorpdfstring{\MakeUppercase{#1}}{#1}
}
  \renewcommand{\loapdfbookmarkstring}{#1}
}

%% bookmark names
\settocstring{Table of Contents}
\setlotstring{List of Tables}
\setlofstring{List of Figures}
\setloastring{List of Algorithms}



%
%% All this junk is for handling the spacing in the TOC, LOF, and LOT.
%
\newlength{\MT@tocentryskip@value}
\newlength{\MT@beforepartskip@value}
\newlength{\MT@beforechapskip@value}
\newlength{\MT@beforesecskip@value}
\newlength{\MT@beforesubsecskip@value}
\newlength{\MT@beforesubsubsecskip@value}
\newlength{\MT@beforeparaskip@value}
\newlength{\MT@beforesubparaskip@value}
\newlength{\MT@beforefigskip@value}
\newlength{\MT@beforetableskip@value}

\def\set@MTtocskip#1{%
  \setlength{\MT@tocentryskip@value}{#1}
  % set base lengths
  \setlength{\MT@beforepartskip@value}{2\MT@tocentryskip@value}
  \setlength{\MT@beforechapskip@value}{1.5\MT@tocentryskip@value}
  \setlength{\MT@beforesecskip@value}{0in}
  \setlength{\MT@beforesubsecskip@value}{0in}
  \setlength{\MT@beforesubsubsecskip@value}{0in}
  \setlength{\MT@beforeparaskip@value}{0in}
  \setlength{\MT@beforesubparaskip@value}{0in}
  \setlength{\MT@beforefigskip@value}{\MT@tocentryskip@value}
  \setlength{\MT@beforetableskip@value}{\MT@tocentryskip@value}
  % add glue
  \addtolength{\MT@beforepartskip@value}{\z@ \@plus\p@}
  \addtolength{\MT@beforechapskip@value}{\z@ \@plus\p@}
  \addtolength{\MT@beforesecskip@value}{\z@ \@plus.2\p@}
  \addtolength{\MT@beforesubsecskip@value}{\z@ \@plus.2\p@}
  \addtolength{\MT@beforesubsubsecskip@value}{\z@ \@plus.2\p@}
  \addtolength{\MT@beforeparaskip@value}{\z@ \@plus.2\p@}
  \addtolength{\MT@beforesubparaskip@value}{\z@ \@plus.2\p@}
  \addtolength{\MT@beforefigskip@value}{\z@ \@plus.2\p@}
  \addtolength{\MT@beforetableskip@value}{\z@ \@plus.2\p@}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
}
\set@MTtocskip{10pt}

\newcommand{\theMTchapter}{\@Roman\c@chapter}
\renewcommand{\theMTchapter}{\thechapter}
\renewcommand{\listfigurename}{LIST OF FIGURES \\ Figure \hfill Page}
\renewcommand{\listtablename}{LIST OF TABLES \\ Table \hfill Page}
\renewcommand{\listalgorithmname}{\hspace{1.0in}LIST OF ALGORITHMS \newline Algorithm \hfill Page}
  %% the listalgorithmname has the \hspace to center the title as there is no other quick method.

\newcommand{\theHalgorithm}{\arabic{algorithm}} %this provides compatability with the algorithmic package


\renewcommand{\appendix}{%
  \if@openright
    \cleardoublepage
  \else
    \clearpage
  \fi
  \quad \vfill
  \begin{center}
    APPENDICES
  \end{center}
  \vfill \quad
  \renewcommand{\@chapapp}{\MakeUppercase{\appendixname}}
  \thispagestyle{tcplain}%    Do NOT use the \back@pagestyle macro here
  \settocdepth{\appendix@tocdepth}
  \setcounter{chapter}{0}%
  \setcounter{section}{0}%
  \def\thechapter{\@Alph\c@chapter}
  \def\chapapp@tocdepth{\expandafter\appendix@tocdepth}
  \def\chapapp@chapter{\app@chapter}
  \def\chapapp@schapter{\app@schapter}
  \renewcommand{\thesection}{\thechapter.\@arabic\c@section}
  \phantomsection%
  \protect{\addcontentsline{toc}{chapter}{APPENDICES}}
}

\def\app@chapter[#1]#2{%
  \quad \vfill
  \ifnum \c@secnumdepth > \m@ne
    \refstepcounter{chapter}%
    \typeout{*****************  \@chapapp\space\thechapter. *****************}%
    \protect{\addcontentsline{toc}{chapter}{\texorpdfstring%
{\hspace{0.30in}\MakeUppercase{\@chapapp}\space\protect\numberline{\thechapter}\hspace{-0.18in} : \space#1 \vspace{-0.15in}}%
{APPENDIX\space\thechapter : \space#1}}% end addcontentsline
} %end protect
  \else
    \addcontentsline{toc}{section}{\MakeUppercase{#1}}%
  \fi
  \protect{\chaptermark{#1}}%
  \if@twocolumn
    \@topnewpage[\@makeapphead{#2}]%
  \else
    \@makeapphead{#2}%
    \@afterheading
  \fi
  \vfill \quad
  \clearpage
}

\def\@makeapphead#1{%
  \ifnum \@marginsize = 4 % oldmargins
    \vspace*{20\p@}%
  \fi
{ \parindent \z@ \raggedright \normalfont
    \quad \vfill
    \centering \underline{\MakeUppercase{\appendixname}\space \thechapter}
    \par\nobreak
    \vskip 20\p@
    \interlinepenalty\@M
    \centering \MakeUppercase{#1}\par\nobreak
    \vfill \quad
}
}

\setappendixtocdepth{0}
\renewcommand\@dotsep{0.2} %%dot separation in TOC, LOT, LOF and LOA

\renewcommand*\l@chapter[2]{% this changes spacings in the TOC
  \ifnum \c@tocdepth >\m@ne
    \addpenalty{-\@highpenalty}%
    \addvspace{\MT@beforechapskip@value}%
    \setlength\@tempdima{1.5em}% was 1.5em is just right
    \begingroup
      \parindent \z@ \rightskip \@pnumwidth
      \parfillskip -\@pnumwidth
      \leavevmode 
      \advance\leftskip\@tempdima
      \hskip -\leftskip
      #1\nobreak\normalfont\normalcolor
      \leaders\hbox{$\m@th
        \mkern \@dotsep mu\hbox{.}\mkern \@dotsep
        mu$}\hfill
      \nobreak
%       \hb@xt@\@pnumwidth{\hss #2} %this extends dots to pg#width away from pg #
	\hfil #2 %extend all way to pge # per dge desires.
      \par
      \penalty\@highpenalty
    \endgroup 
    \addvspace{\MT@beforechapskip@value}%
  \fi}


\newcommand*{\MT@dottedtocline}[5]{%
  \ifnum #1>\c@tocdepth \else
    \addvspace{\MT@@toclineskip}
{\leftskip #2\relax \rightskip \@tocrmarg \parfillskip -\rightskip
     \parindent #2\relax\@afterindenttrue
     \interlinepenalty\@M
     \leavevmode
     \@tempdima #3\relax
     \advance\leftskip \@tempdima \null\nobreak\hskip -\leftskip
{#4}\nobreak
     \leaders\hbox{$\m@th 
	\mkern \@dotsep mu\hbox{.} \mkern \@dotsep
	 mu$}\hfill
     \nobreak
     \hfil\normalfont \normalcolor #5%
%      \hb@xt@\@pnumwidth{\hfil\normalfont \normalcolor #5}%
     \par
}%
  \fi}
  
\renewcommand*\l@section{%
  \let\MT@@toclineskip=\MT@beforesecskip@value
  \MT@dottedtocline{1}{1.5em}{1.5em}} %was 2.0em and 2.3em, 13apr2008
\renewcommand*\l@subsection{%
  \let\MT@@toclineskip=\MT@beforesubsecskip@value
  \MT@dottedtocline{2}{2.6em}{2.6em}} %was 4.3em and 3.2 em, 13apr2008
\renewcommand*\l@subsubsection{%
  \let\MT@@toclineskip=\MT@beforesubsubsecskip@value
  \MT@dottedtocline{3}{3.7em}{3.7em}} %was 7.5em & 4.1em, 13apr2008
\renewcommand*\l@paragraph{%
  \let\MT@@toclineskip=\MT@beforeparaskip@value
  \MT@dottedtocline{4}{10.5em}{5em}}
\renewcommand*\l@subparagraph{%
  \let\MT@@toclineskip=\MT@beforesubparaskip@value
  \MT@dottedtocline{5}{12.5em}{6em}}

\renewcommand*\l@figure{%
  \let\MT@@toclineskip=\MT@beforefigskip@value
  \MT@dottedtocline{1}{1.5em}{2.3em}}% this is indented 1.5em so that 
                                     % if you wish, you can add 'Figure' header
                                     % centered above the numbers using \addtocontents
\renewcommand*\l@table{%
  \let\MT@@toclineskip=\MT@beforetableskip@value
  \MT@dottedtocline{1}{1.5em}{2.3em}}% ditto

\newlength{\MT@tmpa}



% simplify setup   now i only have to call \contents to get all the lists and tables done. 
\newcommand{\contents}{%
  \newpage
  \newlinestretch{\@spacing}
  \setlotdepth
  \setlofdepth  %these tell listof table and figures to print output despite what appears in TOC.

  \do@contentspage
  \do@tablespage
  \do@figurespage
  \do@algorithmspage

  \chead{}
  \setlength{\headheight}{0pt}\setlength{\textheight}{614pt}
  \pagestyle{plain}
}


\newcommand{\do@contentspage}{%
% \pagestyle{\front@pagestyle}
  \ifcontentspage
    \if@openright\cleardoublepage\else\clearpage\fi 
    % must clear page here, so that phantomsection\addcontentsline is on the correct page
    \phantomsection%
    \pdfbookmark[0]{\tocpdfbookmarkstring}{ETDtoc}%

    \pagestyle{fancy}
    \setlength{\headheight}{40pt}\setlength{\textheight}{574pt}
    \addtocontents{toc}{\protect \afterpage{\protect \pagestyle{fancy} \protect \headheight 40pt \protect \chead{\protect \thepage\\ \vspace{24pt} {TABLE OF CONTENTS -- CONTINUED} \\ \vspace {.25in}}}}

    \settoheight{\MT@tmpa}{A}
    \set@MTtocskip{\MT@tmpa}
{\newlinestretch{1}
    \tableofcontents
}
    \newpage
  \fi
%   \pagestyle{\front@pagestyle}
}

\newcommand{\do@tablespage}{%
%   \pagestyle{\front@pagestyle}
  \protect\setcounter{tocdepth}{1}
  \iftablespage
    \if@openright\cleardoublepage\else\clearpage\fi 
    % must clear page here, so that phantomsection\addcontentsline is on the correct page
    \phantomsection%
    \pdfbookmark[1]{\lotpdfbookmarkstring}{someTables}%

    \pagestyle{fancy}
    \setlength{\headheight}{50pt}\setlength{\textheight}{564pt}
    \addtocontents{lot}{\protect \afterpage{\protect \pagestyle{fancy} \protect \headheight 50pt \protect \chead{\protect \thepage\\ \vspace{24pt} {LIST OF TABLES -- CONTINUED}\\~Table \hfill Page \vspace {.25in}}}}

    \settoheight{\MT@tmpa}{A}
    \set@MTtocskip{\MT@tmpa}
{\newlinestretch{1}
     \listoftables
}
    \newpage
  \fi
%   \pagestyle{\front@pagestyle}
}


\newcommand{\do@figurespage}{%
%   \pagestyle{\front@pagestyle}
  \iffigurespage
    \if@openright\cleardoublepage\else\clearpage\fi 
    % must clear page here, so that phantomsection\addcontentsline is on the correct page
    \phantomsection%
    \pdfbookmark[1]{\lofpdfbookmarkstring}{figas}%
    
    \pagestyle{fancy}
    \setlength{\headheight}{50pt}\setlength{\textheight}{564pt}
    \addtocontents{lof}{\protect \afterpage{\protect \pagestyle{fancy} \protect \headheight 50pt \protect \chead{\protect \thepage\\ \vspace{24pt} {LIST OF FIGURES -- CONTINUED}\\~Figure \hfill Page \vspace {.25in}}}}

    \settoheight{\MT@tmpa}{A}
    \set@MTtocskip{\MT@tmpa}
{\newlinestretch{1}
    \listoffigures
}
     \newpage
  \fi
%   \pagestyle{\front@pagestyle}
}


\newcommand{\do@algorithmspage}{%
%   \pagestyle{\front@pagestyle}
  \ifalgorithmspage
    \if@openright\cleardoublepage\else\clearpage\fi 
    % must clear page here, so that phantomsection\addcontentsline is on the correct page
    \phantomsection%
    \pdfbookmark[1]{\loapdfbookmarkstring}{algores}%

    \pagestyle{fancy}
    \setlength{\headheight}{50pt}\setlength{\textheight}{564pt}
    \addtocontents{loa}{\protect \afterpage{protect \pagestyle{fancy} \protect \headheight 50pt \protect \chead{\protect \thepage\\ \vspace{24pt} {LIST OF ALGORITHMS -- CONTINUED}\\~Algorithm \hfill Page \vspace {.25in}}}}

    \settoheight{\MT@tmpa}{A}
    \set@MTtocskip{\MT@tmpa}
{\newlinestretch{1}
    \begin{doublespaced} %ensure double spacing for list of algorithms or as I sometimes call them 'al gore isms'
       \listofalgorithms
    \end{doublespaced}
}
     \newpage
  \fi
 
}





%%%% for numbering figures and tables in sequential order not beginning again at the start of each chapter.
\newcommand{\@removefromreset}[2]{{%
  \expandafter\let\csname c@#1\endcsname\@removefromreset
  \def\@elt##1{%
    \expandafter\ifx\csname c@##1\endcsname\@removefromreset
    \else
      \noexpand\@elt{##1}%
    \fi}%
  \expandafter\xdef\csname cl@#2\endcsname{%
    \csname cl@#2\endcsname}}}
    
\ifnumreset
	\def\thefigure{\thechapter.\@arabic\c@figure}
	\def\thetable{\thechapter.\@arabic\c@table}
	\def\theequation{\thechapter.\arabic{equation}}
	\def\thealgorithm{\thechapter.\arabic{algorithm}}
\else
	\@removefromreset{figure}{chapter}
	\@removefromreset{table}{chapter}
	\@removefromreset{equation}{chapter}
	\@removefromreset{algorithm}{chapter}
	\def\thefigure{\@arabic\c@figure}
	\def\thetable{\@arabic\c@table}
	\def\thealgorithm{\@arabic\c@algorithm}
	\def\theequation{\arabic{equation}}
\fi




%% Redefine the macro used for floats (including figures and tables)
%% so that single spacing is used.
%% (Note \def\figure{\@float{figure}set single spacing} doesn't work
%%  because figure has an optional argument)
%%
%% This code was copied directly from latex.ltx, but with the
%% \newlinespacing{} macro added to it.
%
\def\@xfloat #1[#2]{%
  \@nodocument
  \def \@captype {#1}%
   \def \@fps {#2}%
   \@onelevel@sanitize \@fps
   \def \reserved@b {!}%
   \ifx \reserved@b \@fps
     \@fpsadddefault
   \else
     \ifx \@fps \@empty
       \@fpsadddefault
     \fi
   \fi
   \ifhmode
     \@bsphack
     \@floatpenalty -\@Mii
   \else
     \@floatpenalty-\@Miii
   \fi
  \ifinner
     \@parmoderr\@floatpenalty\z@
  \else
    \@next\@currbox\@freelist
{%
       \@tempcnta \sixt@@n
       \expandafter \@tfor \expandafter \reserved@a
         \expandafter :\expandafter =\@fps
         \do
{%
           \if \reserved@a h%
             \ifodd \@tempcnta
             \else
               \advance \@tempcnta \@ne
             \fi
           \fi
           \if \reserved@a t%
             \@setfpsbit \tw@
           \fi
           \if \reserved@a b%
             \@setfpsbit 4%
           \fi
           \if \reserved@a p%
             \@setfpsbit 8%
           \fi
           \if \reserved@a !%
             \ifnum \@tempcnta>15
               \advance\@tempcnta -\sixt@@n\relax
             \fi
           \fi
}%
       \@tempcntb \csname ftype@\@captype \endcsname
       \multiply \@tempcntb \@xxxii
       \advance \@tempcnta \@tempcntb
       \global \count\@currbox \@tempcnta
}%
    \@fltovf
  \fi
  \global \setbox\@currbox
    \color@vbox
      \normalcolor
      \vbox \bgroup
        \newlinestretch{1.0}
        \hsize\columnwidth
        \@parboxrestore
        \@floatboxreset
}


% Do standard figure captions.
% 
\long\def\@makecaption#1#2{%
  \vskip\abovecaptionskip
  \sbox\@tempboxa{#1: #2}%
  \ifdim \wd\@tempboxa >\hsize
#1: #2\par
  \else
    \global \@minipagefalse
    \hb@xt@\hsize{\hfil\box\@tempboxa\hfil}%
  \fi
  \vskip\belowcaptionskip}



%
%% Chapter headings - centered, all caps, chapter number - roman numeral
%
%
\def\chapapp@tocdepth{\expandafter\chapter@tocdepth}
%
%% The following two def's provide the Indirection needed to work 
%% with hyperref package, since hyperref redefines @chapter and
%% @schapter
%
\def\chapapp@chapter{\chap@chapter}
\def\chapapp@schapter{\chap@schapter}




%
%% Make @chapter and @schapter wrappers for (chap@chapter or app@chapter)
%% and (chap@schapter or app@schapter).  This indirection is necessary to
%% work well with the hyperref package.
%
\def\my@empty{}
\def\@chapter[#1]#2{%
  \def\my@temp{#1}%
  \ifx\my@temp\my@empty
    \chapapp@chapter{#2}
  \else
    \chapapp@chapter[#1]{#2}
  \fi
}
\def\@schapter#1{%
  \chapapp@schapter{#1}
}
%
%% The actual guts of the chapter heading routines
%
\renewcommand{\chapter}{%
  \if@openright\cleardoublepage\else\clearpage\fi
  \if@tcpage% DO NOT use the \front@pagestyle macro here.
{\thispagestyle{tcplain}}
  \else
{\thispagestyle{plain}} %
  \fi 
  \settocdepth{\chapapp@tocdepth}
  \global\@topnum\z@
  \@afterindenttrue
  \secdef\@chapter\@schapter
}

%% TOC chapter headings
\def\chap@chapter[#1]#2{%
  \ifnum \c@secnumdepth >\m@ne
    \refstepcounter{chapter}%
    \typeout{*****************  \@chapapp\space\thechapter. *****************}%
    \addcontentsline{toc}{chapter}%
{\texorpdfstring%
{\protect\numberline{\thechapter.}\MakeUppercase{#1}}%  period after the chapter number before the chapter name
{Chapter \thechapter\space\textemdash\space#1}}%
  \else
    \addcontentsline{toc}{chapter}%
{\texorpdfstring{\MakeUppercase{#1}}{#1}}%
  \fi
  \protect{\chaptermark{#1}}%
  \if@twocolumn
    \@topnewpage[\@makechapterhead{#2}]%
  \else
    \@makechapterhead{#2}%
    \@afterheading
  \fi
}

\def\@makechapterhead#1{%
  \ifnum \@marginsize = 4 % oldmargins
    \vspace*{20\p@}% changed from 50
  \fi
{ \parindent \z@ \raggedright \normalfont
    \interlinepenalty\@M
%    \centering  \MakeUppercase{#1}\par\nobreak
\ifnum \c@secnumdepth > 0
    \centering CHAPTER\space\thechapter\\ \MakeUppercase{#1}\par\nobreak
\else
    \centering \MakeUppercase{#1}\par\nobreak
\fi
    \vskip 20\p@
}
}


\def\chap@schapter#1{%
  \if@twocolumn
    \@topnewpage[\@makeschapterhead{#1}]%
  \else
    \@makeschapterhead{#1}%
    \@afterheading
  \fi
}

\def\@makeschapterhead#1{%
  \ifnum \@marginsize = 4 % oldmargins
    \vspace*{30\p@}% changed from 50
  \fi
{ \parindent \z@ \raggedright \normalfont
    \interlinepenalty\@M
    \centering  #1\par\nobreak
    \vskip 10\p@
}
}



%% formatting of items before main body of text
\newenvironment{preliminary}%
{  
    \newlinestretch{1.0}%
    \pagenumbering{alph}%
    \pagestyle{\front@pagestyle}%
    \iftitlepage%
      \maketitle%
    \fi%

    \pagenumbering{roman} 
    \makecopyright


    \ifsignaturepage%
      \makesignature%
    \fi%

    \makepermission

    \newlinestretch{\@spacing}%
}%
{%
    \if@draft%
    \else%
      \if@twoside%
        \if@openright%
          \cleardoublepage%
        \fi%
      \fi%
    \fi%
    \newpage%
    \pagenumbering{arabic}%
    \pagestyle{\body@pagestyle}%
    \newlinestretch{\@spacing}%
}%


\renewcommand{\maketitle}{%
  \normalfont
%   \pagenumbering{alph} %change numbering to alph from roman so that duplicate page# not created
  \begingroup
    \newlinestretch{1}%
    \begin{titlepage}%
      \phantomsection%
      \pdfbookmark[0]{Titlepage}{title}%
      \title@top%
      \title@text% contains a \vfill between \degree and \department
      \setcounter{page}{1}%
    \end{titlepage}% this has a \newpage
  \endgroup%
  \setcounter{page}{2}%
% \pagenumbering{roman} %revert back to roman page numbering for rest of front matter
}%maketitle

\newcommand{\title@top}{%
% make sure that linestretch is already set to 1, and all 
% grouping/sectioning commands have already been begun.
  \ifstrictmargins
    \ifnum \@marginsize = 4 % oldmargins
      \vspace*{50\p@}%
    \fi
    \vspace*{0.5in}
    \begin{center}%
      \begin{doublespaced}%
{\expandafter\MakeUppercase{\@title}}\\
      \end{doublespaced}%
    \end{center}%
  \else%
  \vfill
  \begin{center}   
      \begin{doublespaced}
{\expandafter\MakeUppercase{\@title}}
      \end{doublespaced}
    \end{center}%
  \fi%
}

\newcommand{\title@text}{
  \begin{center}
    by\\
    \ \\
{{\@author}}\\
    \vfill 
    A {\degreetype} submitted in partial fulfillment \\
    of the requirements for the degree \\
    \quad \\ 
    of \\
    \quad \\ 
{\degree}\\
    \quad \\ 
    in \\ 
    \quad \\
{\@degreetitle}

    \vfill

    MONTANA STATE UNIVERSITY \\
    Bozeman, Montana \\ \vspace*{.3in}
{\@submitdate}%
    %\vfill
  \end{center}
}
 
% Make an MSU approved copyright page
\newcommand{\makecopyright}{%
  \if@openright\cleardoublepage\else\clearpage\fi 
  \quad \vspace{2.75in}
  \phantomsection%
  \pdfbookmark[1]{Copyright}{copyright}%

  \begin{center}
    \begin{doublespaced}
    \copyright \  Copyright 

    by 

{\@author} 

{\@copyrightyear} 

    All Rights Reserved
    \end{doublespaced}
  \end{center}
  \vfill
  % reset page counter.
  \setcounter{page}{1}
  \thispagestyle{empty}
}

\newcommand{\makesignature}{%
  \if@openright\cleardoublepage\else\clearpage\fi 
  \phantomsection%
  \pdfbookmark[1]{Approval}{approval}%
  \begin{center}
    APPROVAL \\ \quad \\
    of a {\degreetype} submitted by \\ \quad \\ 
{\@author}\\ 
  \end{center}

  \vspace*{.5in}

  \begin{singlespaced}
    This {\degreetype} has been read by each member of the {\degreetype} committee
    and has been found to be satisfactory regarding content, English
    usage, format, citations, bibliographic style, and consistency,
    and is ready for submission to the Graduate School.
  \end{singlespaced}
  
  \vspace*{.75in}
  \begin{center}
{\@committeechair}
  \end{center}
  \vspace*{.3in}

  \begin{center}
    Approved for the Department of {\@department}
  \end{center}

  \begin{center}
{\@departmentchair}
  \end{center}

  \vspace*{.3in}


  \begin{center}
    Approved for the Graduate School
  \end{center}
  
  \begin{center}
{\@graduatedean}
  \end{center}

%    \vfill \quad %to center on page
\thispagestyle{tcplain} 
}


\newcommand{\makepermission}{ %
  \if@openright\cleardoublepage\else\clearpage\fi 
  \phantomsection%
  \pdfbookmark[1]{Permission}{permission}%
  \begin{center}
    STATEMENT OF PERMISSION TO USE \\ \quad 
    \end{center}
    \begin{doublespaced}
      {\perm} \\
    \end{doublespaced}
     %\vspace*{1.2in}
{\@author} \\ \\ \quad 
{\@submitdate}
  \thispagestyle{tcplain} 
}




%% dedication formatting
\newenvironment{dedication}{%
  \typeout{*****************    Dedication    ******************}
  \if@openright\cleardoublepage\else\clearpage\fi 
  \phantomsection%
  \pdfbookmark[1]{Dedication}{dedication}
    \chapter*{\MakeUppercase{Dedication}}
  \vspace{0.4in}
  \begingroup
  \newlinestretch{1.0}
}{%
\par\endgroup}% end dedication


%
%% \begin{acknowledgements}...\end{acknowledgements} formats an
%% acknowledgements section
\newenvironment{acknowledgements}{%
  \typeout{***************** Acknowledgements ******************}
  \if@openright\cleardoublepage\else\clearpage\fi 
  \phantomsection%
  \pdfbookmark[1]{Acknowledgements}{acknowledgements}
  \chapter*{\MakeUppercase{Acknowledgements}}
  \vspace{0.40in}
  \begingroup
  %\newlinestretch{1.0}
}{\par\endgroup}%Acknowledgements


%% \begin{vita}...\end{vita} formats a
%% vita section
\newenvironment{vita}{%
  \typeout{*****************        Vita       ******************}
  \if@openright\cleardoublepage\else\clearpage\fi 
  \phantomsection%
  \pdfbookmark[1]{Cirriculum Vitae}{vita}
  \chapter*{\MakeUppercase{Vita}}
  \@mkboth{\scshape\MakeUppercase{Vita}}%
{\scshape\MakeUppercase{Vita}}%
  \begingroup
  \newlinestretch{1.0}
}{ \par\endgroup}%Vita


%% Change \begin{abstract}...\end{abstract} to follow guidelines
%% and put the abstract on a separate page (checking @openright).
\renewenvironment{abstract}{%
  \typeout{*****************      Abstract     ******************}
  \if@openright\cleardoublepage\else\clearpage\fi 
  \phantomsection%
  \pdfbookmark[0]{Abstract}{abstract}
  \chapter*{\MakeUppercase{Abstract}}
  \vspace{0.4in}
  \begingroup
   % \hspace*{2.5em}
    \newlinestretch{1.0}
}{\par\endgroup}%abstract


%% formatting for stuff after the main body of text
\newenvironment{postliminary}%
{\pagestyle{\back@pagestyle}}%
{\settocdepth{\chapter@tocdepth}%
   \pagestyle{\body@pagestyle}}


%% setup reference page title and TOC entry
\newcommand{\refname}{References Cited}
\newcommand{\references}{%
  \ifbibpage
	\typeout{*****************     \refname    ******************}
	\newlinestretch{1.0}
	\if@openright\cleardoublepage\else\clearpage\fi 
	% must clear page here, so that phantomsection\addcontentsline is on the correct page
	\phantomsection
    \addcontentsline{toc}{chapter}%
    {\texorpdfstring{\MakeUppercase{\refname}}{\refname}}
   
     \ifAppend
	\if@openright
	   \cleardoublepage
	\else
	   \clearpage
	\fi
	\quad \vfill
	\begin{center}
	\underline{\MakeUppercase{\refname}}
	\end{center}
	\vfill \quad
	\if@openright
	   \cleardoublepage
	\else
	   \clearpage
	\fi
    \else  %there is no appendix so put \refname on same page
	\centering\underline{\MakeUppercase{\refname}}
	\vskip 30\p@  %\vskip 0.3in
    \fi %end ifAppend

    \bibliography{\@bibfiles}
  \fi %end if bibpage
}


%%%   bibiliography page formatting    ...this is not for bibliography styles
\renewenvironment{thebibliography}[1]{
{%
%     \ifAppend
% 	\if@openright
% 	   \cleardoublepage
% 	\else
% 	   \clearpage
% 	\fi
% 	\quad \vfill
% 	\begin{center}
% 	\underline{\MakeUppercase{\refname}}
% 	\end{center}
% 	\vfill \quad
% 	\if@openright
% 	   \cleardoublepage
% 	\else
% 	   \clearpage
% 	\fi
%     \else  %there is no appendix so put \refname on same page
% 	\centering\underline{\MakeUppercase{\refname}}
% 	\vskip 30\p@  %\vskip 0.3in
%     \fi %end ifAppend

  \pagestyle{\body@pagestyle}% REFERENCES uses BODY pagestyle, not endmatter.
}
  \list{\@biblabel{\@arabic\c@enumiv}}%
{ \settowidth\labelwidth{\@biblabel{#1}}%
      \leftmargin\labelwidth
      \advance\leftmargin\labelsep
      \@openbib@code
      \usecounter{enumiv}%
      \let\p@enumiv\@empty
      \renewcommand\theenumiv{\@arabic\c@enumiv}
}%
  \sloppy
  \clubpenalty4000
  \@clubpenalty \clubpenalty
  \widowpenalty4000%
  \sfcode`\.\@m}
{\def\@noitemerr
{\@latex@warning{Empty ``thebibliography'' environment}
  \pagestyle{\back@pagestyle}
}%
  \endlist
}


%%%%%%    Page Styles
%
% redefinition of tcplain to meet MSU requirements (top center page numbering)
\if@twoside % if two-sided printing
  \newcommand{\ps@tcplain}{%
    \@tcpagetrue%
    \let\@mkboth\markboth%
    \def\@oddfoot{%
      \if@draft%
        \blDRAFT\hfil%
{\slshape\small\today}\hfil\brDRAFT%
      \fi%
}%
    \let\@evenfoot\@oddfoot%
    \def\@oddhead{%
      \if@draft\tlDRAFT\fi%
      \hfil\thepage\hfil%
      \if@draft\trDRAFT\fi%
}%
    \def\@evenhead{%
      \if@draft\tlDRAFT\fi%
      \hfil\thepage\hfil%
      \if@draft\trDRAFT\fi%
}%
}%ps@tcplain
\else % if one-sided printing
  \newcommand{\ps@tcplain}{%
    \@tcpagetrue%
    \let\@mkboth\markboth%
    \def\@oddfoot{%
      \if@draft%
        \blDRAFT\hfil%
{\slshape\small\today}\hfil\brDRAFT%
      \fi%
}%
    \def\@oddhead{%
      \if@draft\tlDRAFT\fi%
      \hfil\thepage\hfil%
      \if@draft\trDRAFT\fi%
}%
}%ps@tcplain
\fi % @twoside


%% Section formatting
\renewcommand{\section}{%
  \@startsection{section}{1}{\z@}%
{5.00ex \@plus 1ex \@minus .2ex}%
{4.50ex \@plus.2ex}%
{\newlinestretch{1}\normalfont\centering}
}
\renewcommand{\subsection}{%
  \@startsection{subsection}{2}{\z@}%
{5.00ex\@plus 1ex \@minus .2ex}%
{1.0ex \@plus .2ex}%
{\newlinestretch{1}\normalfont\normalsize}
}
\renewcommand{\subsubsection}{%
  \@startsection{subsubsection}{3}{.25in}%
{5.00ex\@plus -1ex \@minus -.2ex}%{-1.25ex\@plus -1ex \@minus -.2ex}%
{0ex}%
{\newlinestretch{1}\normalfont\normalsize}
}


% New commands to ensure underlining and such for sections, subs and sub-subs
% 
\newcommand{\msusection}[1]{%
  \section[#1]{\underline{#1}}
}
\newcommand{\msusubsection}[1]{%
  \subsection[#1]{\protect{\noindent\underline{#1}}}
}

\newcommand{\msulongsubsection}[3]{%
  \subsection[#1]{\protect{\noindent #2 \newline \underline{#3}}}
}

\newcommand{\msusubsubsection}[1]{%
  \subsubsection[#1]{\underline{#1}: \quad}
}



%%%%%%    Document Layout
%
%% Default line spacing: use current setting from options.
%
\linespacing{\@thesislnsp}
%
%% Page layout (see The LaTeX Companion pp.84-86).
%
%% By default, TeX puts the ``reference point'' one inch down and to
%% the right of the top-left corner of the page.  This moves it back
%% to the top-left corner (making the rest of the layout easier to
%% define).
\setlength{\voffset}{-1in}
\setlength{\hoffset}{-1in}
%
%% Instead of hard-coding the page layout for letter paper
%% (8.5" x 11"), we will base it on \paperheight and \paperwidth,
%% so that it works with options that change the paper size.
\setlength{\textheight}{\paperheight}
\setlength{\textwidth}{\paperwidth}
%
%% Now, set the margin-dependent values.
%
\ifcase\@marginsize % set narrow margins: 1 1/4" left, 3/4" others
%
\addtolength{\textheight}{-1.5in}
\setlength{\topmargin}{.5in}
\setlength{\headsep}{.25in}
\setlength{\footskip}{.25in}
\addtolength{\textwidth}{-2in}
\setlength{\oddsidemargin}{1.25in}
\setlength{\evensidemargin}{.75in}
\setlength{\marginparwidth}{.5in}
\setlength{\marginparsep}{.125in}
%
\or % set normal margins: 1.5 " left, 1" others (modified 01/27/01)
%
\addtolength{\textheight}{-2in}
\setlength{\topmargin}{0.5in}
\setlength{\headsep}{0.5in}   % reduced by headheight, below
\setlength{\footskip}{0.5in}
\addtolength{\textwidth}{-2.5in}
\setlength{\oddsidemargin}{1.5in}
\setlength{\evensidemargin}{1in}
\setlength{\marginparwidth}{.75in}
\setlength{\marginparsep}{.125in}
%
\or % set wide margins: 1.5" left, 1" others, 2"" top (modified 01/14/00)
%
\addtolength{\textheight}{-3in}
\setlength{\topmargin}{1in}
\setlength{\headsep}{.5in} % reduced by headheight, below
\setlength{\footskip}{0.5in}
\addtolength{\textwidth}{-2.5in}
\setlength{\oddsidemargin}{1.5in}
\setlength{\evensidemargin}{1in}
\setlength{\marginparwidth}{.75in}
\setlength{\marginparsep}{.125in}
%
\or % set extra wide margins: 1 1/2"" all around
%
\addtolength{\textheight}{-3in}
\setlength{\topmargin}{1in}
\setlength{\headsep}{.5in}
\setlength{\footskip}{.5in}
\addtolength{\textwidth}{-3in}
\setlength{\oddsidemargin}{1.5in}
\setlength{\evensidemargin}{1.5in}
\setlength{\marginparwidth}{1in}
\setlength{\marginparsep}{.25in}
%
\or % use oldmargin (OLD GT): 1.5" left and top, 1" others (modified 01/27/01)
%
\addtolength{\textheight}{-2.5in}
\setlength{\topmargin}{0.75in}
\setlength{\headsep}{0.75in}   % reduced by headheight, below
\setlength{\footskip}{0.5in}
\addtolength{\textwidth}{-2.5in}
\setlength{\oddsidemargin}{1.5in}
\setlength{\evensidemargin}{1in}
\setlength{\marginparwidth}{.75in}
\setlength{\marginparsep}{.125in}
%
\fi%@marginsize
%
%
%% Adjust \headsep to include height of running head.
\addtolength{\headsep}{-\headheight}
%
%% Adjust the vertical spacing between the main text and the notes,
%% and between successive notes if they are not single-spaced.
\setlength{\skip\footins}{.75\baselineskip}
%
%% \flushbottom looks silly with lots of extra space between paragraphs
%% better to put the "extra" space at the bottom of the page!
\raggedbottom
%
%% Default page style.
\pagestyle{tcplain}
\setfrontpagestyle{tcplain}
\setbodypagestyle{tcplain}
\setbackpagestyle{tcplain}
%
% margins for MSU ETD's -- 
\addtolength{\textheight}{-.5in}
\addtolength{\topmargin}{.5in}


% \def\strip@period#1.\relax#2\@@@{#1}


%% stuff i commented out 05Mar2008 after fixing appendix/lot/lof issues
\AtBeginDocument{\protect{\setcounter{secnumdepth}{4}}}
% \setcounter{tocdepth}{0}
% \setchaptertocdepth{0}
% \setappendixtocdepth{0}
% \brokenpenalty=10000

% \AtEndDocument{%
%   \immediate\write\@auxout%
% {\string\@writefile{lof}{\string\setcounter{secnumdepth}{4}}}
% }

%